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Merck
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HomeWestern BlottingDot/Slot (Filtration) Blotting

Dot/Slot (Filtration) Blotting

Dot blotting is an ideal technique for quickly assessing the levels of a target antigen across many samples at once. Also, it is a popular method for epitope mapping and screening antibodies for target specificity.

Dot/Slot (Filtration) blotting topics: possible causes and remedies:

Detection of transferrin on a dot blot of human serum using Immobilon® Western Chemiluminescent HRP Substrate.

Figure 1.Detection of transferrin on a dot blot of human serum using Immobilon® Western Chemiluminescent HRP Substrate.

Slow or No Filtration of the Sample Through the Membrane

Possible Cause                                     Remedy

Inadequate vacuum
  • Make sure the blotting unit is closed properly and the seal is intact.
  • Make sure the vacuum source (e.g. pump) is operating properly.
  • Seal off any open wells with a high quality laboratory tape. Increase vacuum level.

Membrane pores clogged
  • Centrifuge or filter samples to remove particulates.
  • Dilute viscous samples with buffer.

Little or No Protein Observed on the Blot

Possible Cause Remedy
Not enough protein applied to the
membrane

Minimize sample dilution and filter more sample through the membrane.

Detergents (e.g., SDS) may inhibit lower
molecular weight proteins from binding to
the membrane

Eliminate detergents if possible.

Stain not sensitive enough

Use a more sensitive stain.

Stained Blot Is Not Uniform

Possible Cause Remedy
Membrane structure was compressed by filter paper

Place a second membrane in the blotting unit to protect the membrane receiving the samples.

Air bubbles trapped in the interior of the membrane

Pre-wet membrane by laying it on the surface of the methanol. Immersing the membrane can entrap air.

Membrane not pre-wet in methanol

Membrane must be pre-wet with methanol; entire membrane should change uniformly from opaque to semi-transparent.

Air bubbles in the sample.

Carefully pipette samples into well to avoid the formation of air bubbles.

Not enough sample volume loaded

Sample must cover the entire exposed membrane area.

Protein Smeared Across the Top of the Membrane

Possible Cause Remedy
Sample leaked across the wells

Make sure the blotting unit is properly assembled, closed and sealed prior to filtration.

Protein Smeared Across the Back of the Membrane

Possible CauseRemedy
Membrane capacity was exceeded

Reduce the amount of protein loaded into the well.

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