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Sigma-Aldrich

5(6)-Carboxy-X-rhodamine

BioReagent, suitable for fluorescence

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Empirical Formula (Hill Notation):
C33H30N2O5
CAS Number:
198978-94-8
Molecular Weight:
534.60
UNSPSC Code:
12352116
PubChem Substance ID:
329752228
NACRES:
NA.32

product line

BioReagent

Quality Level

100

mp

≥250 °C (lit.)

fluorescence

λex 570 nm; λem ~595 nm in 0.1 M Tris pH 8.0

suitability

suitable for fluorescence

SMILES string

OC(=O)c1ccc2c(c1)C(=O)OC23c4cc5CCCN6CCCc(c4Oc7c8CCCN9CCCc(cc37)c89)c56.OC(=O)c%10ccc%11C(=O)OC%12(c%13cc%14CCCN%15CCCc(c%13Oc%16c%17CCCN%18CCCc(cc%12%16)c%17%18)c%14%15)c%11c%10

InChI

1S/2C33H30N2O5/c36-31(37)20-9-10-24-23(15-20)32(38)40-33(24)25-16-18-5-1-11-34-13-3-7-21(27(18)34)29(25)39-30-22-8-4-14-35-12-2-6-19(28(22)35)17-26(30)33;36-31(37)20-9-10-21-24(17-20)33(40-32(21)38)25-15-18-5-1-11-34-13-3-7-22(27(18)34)29(25)39-30-23-8-4-14-35-12-2-6-19(28(23)35)16-26(30)33/h2*9-10,15-17H,1-8,11-14H2,(H,36,37)

InChI key

KLNOCCPJAOCRHF-UHFFFAOYSA-N

Related Categories

Application

5(6)-Carboxy-X-rhodamine may be used as a fluorescent dye in nucleic acid analytical research applications.

Packaging

Bottomless glass bottle. Contents are inside inserted fused cone.

Analysis Note

partially soluble in methanol, 0.1 M Tris pH 8.0

Pictograms

Exclamation mark
GHS07

Signal Word

Warning

Hazard Statements

H315,H319,H335

Hazard Classifications

Eye Irrit. 2 - Skin Irrit. 2 - STOT SE 3

Target Organs

Respiratory system

WGK

WGK 3

Flash Point(F)

Not applicable

Flash Point(C)

Not applicable

Personal Protective Equipment

dust mask type N95 (US), Eyeshields, Gloves

Certificates of Analysis (COA)

Search for Certificates of Analysis (COA) by entering the products Lot/Batch Number. Lot and Batch Numbers can be found on a product’s label following the words ‘Lot’ or ‘Batch’.

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Gadi Cohen et al.
Arteriosclerosis, thrombosis, and vascular biology, 39(8), 1602-1613 (2019-06-14)
The early embryo implantation is characterized by enhanced uterine vascular permeability at the site of blastocyst attachment, followed by extracellular-matrix remodeling and angiogenesis. Two TG (transglutaminase) isoenzymes, TG2 (tissue TG) and FXIII (factor XIII), catalyze covalent cross-linking of the extracellular-matrix.
Tae Seok Seo et al.
Proceedings of the National Academy of Sciences of the United States of America, 102(17), 5926-5931 (2005-04-15)
We report four-color DNA sequencing by synthesis (SBS) on a chip, using four photocleavable fluorescent nucleotide analogues (dGTP-PC-Bodipy-FL-510, dUTP-PC-R6G, dATP-PC-ROX, and dCTP-PC-Bodipy-650) (PC, photocleavable; Bodipy, 4,4-difluoro-4-bora-3alpha,4alpha-diaza-s-indacene; ROX, 6-carboxy-X-rhodamine; R6G, 6-carboxyrhodamine-6G). Each nucleotide analogue consists of a different fluorophore attached to
Jin-Oh You et al.
International journal of nanomedicine, 1(2), 173-180 (2007-08-29)
Reverse microemulsion was used as a template to fabricate chitosan-alginate core-shell nanoparticles encapsulated with enhanced green fluorescent protein (EGFP)-encoded plasmids. The average size of DNA-entrapped nanoparticles measured by dynamic light scattering was increased proportionally, with the N/P ratios ranging from
Jun Wang et al.
Clinical chemistry, 56(4), 623-632 (2010-03-09)
The EGFR [epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian)] gene is known to harbor genomic alterations in advanced lung cancer involving gene amplification and kinase mutations that predict the clinical response to EGFR-targeted inhibitors. Methods for
P J Oefner et al.
Analytical biochemistry, 223(1), 39-46 (1994-11-15)
Using 100 mM of triethylammonium acetate as ion-pairing reagent, phosphodiester oligonucleotides labeled fluorescently at their 5' terminus could be separated successfully on alkylated nonporous 2.3-microns poly(styrene-divinylbenzene) particles by means of high-resolution liquid chromatography. Applying excitation wavelengths of 490, 520, 550
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